1）Zheng L#, Yang C#, Chen P, et al. Vibrio parahaemolyticus from Migratory Birds in China Carries an Extra Copy of tRNA-Gly and Plasmid-Mediated Quinolone Resistance Gene qnrD [J]. Microbiology Spectrum, 2023: e02170-22 (IF=3.7/二区)；

2）Zhao B, Lees J A, Wu H, Yang C*, Falush D*. Genealogical inference and more flexible sequence clustering using iterative PopPUNK [J]. Genome Research, 2023: gr. 277395.122 (IF=7/一区)；

2022

1）Yang C#, Li Y#, Jiang M, Wang L, Jiang Y, et al. Outbreak dynamics of foodborne pathogen Vibrio parahaemolyticus over a seventeen year period implies hidden reservoirs. Nature Microbiology, 2022, 7(8): 1221-1229 (IF=31/一区)；

2）Chang Y#, Li X#, Ding L#, Yang C#, Pan Z, et al. Genetic and Functional Differences of Escherichia coli Strains from Colorectal Cancer Mucosal Tissues, Engineering, 2022, 16: 210-219. (IF=12.8/一区)；

3）Jiang M#, Yang C#, Kwan P#, Zhang L#, Fan H#, Jin Y, et al. Rapid Multilateral and Integrated Public Health Response to a Cross-City Outbreak of Salmonella Enteritidis Infections Combining Analytical, Molecular, and Genomic Epidemiological Analysis, Frontiers in Microbiology, 2022, 13: 772489 (IF=5.2/二区)；

2021

1）Xiao Y, Yang C, Yu L, et al. Human gut-derived B. longum subsp. longum strains protect against aging in ad-galactose-induced aging mouse model[J]. Microbiome, 2021, 9: 1-23  (IF=15.5/一区)；

2）Yang C#, Li Y#, Zuo L#, Jiang M, Zhang, X, Xie L, et al. Genomic Epidemiology and Antimicrobial Susceptibility Profile of Enterotoxigenic Escherichia coli From Outpatients With Diarrhea in Shenzhen, China, 2015–2020, Frontiers in Microbiology, 2021, 12:732068 (IF=5.2/二区)；

2020

1）Yang C#, Jiang M#, Wang X#, Tang X#, Fang S#, Li H, et al. Viral RNA level, serum antibody responses, and transmission risk in recovered COVID-19 patients with recurrent positive SARS-CoV-2 RNA test results: a population-based observational cohort study. Emerging Microbes & Infections, 2020;9(1):2368–78 (IF=13.2/一区)；

2）Jiang M#, Zhu F#, Yang C#, Deng Y, Kwan PSL, Li Y, et al. Whole-Genome Analysis of Salmonella enterica Serovar Enteritidis Isolates in Outbreak Linked to Online Food Delivery, Shenzhen, China, 2018. Emerging Infectious Diseases, 2020;26(4), (IF=11.8/一区)；

3）Cui Y#*, Yang C#, Qiu H#, Wang H, Yang R, Falush D*. The landscape of coadaptation in Vibrio parahaemolyticus. eLife, 2020, 9: e54136 (IF=7.7/一区)；

4）Wang H#, Yang C#*, Sun Z#, Zheng W, Zhang W, Yu H, et al. Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages. PLoS Neglected Tropical Diseases, 2020;14(2):e0008046 (IF=3.8/一区)；

2019

1）Yang C#, Pei X#, Wu Y, Yan L, Yan Y, Song Y, et al. Recent mixing of Vibrio parahaemolyticus populations. The ISME Journal, 2019;13(10):2578–88 (IF=11.0/一区)；

2）Yang C, Zhang X, Fan H, Li Y, Hu Q, Yang R, et al. Genetic diversity, virulence factors and farm-to-table spread pattern of Vibrio parahaemolyticus food-associated isolates. Food Microbiology. 2019, 84:103270 (IF=5.3/一区)；

　　围绕病原微生物进化和致病机制：首次揭示全球副溶血弧菌种群结构，提出近期跨洋迁徙融合理论；拓展全基因组上位互作(GWES)方法，构建首个细菌GWES完整图谱；发现、验证数个新毒力相关因子，提出群体遗传新参数Ner，建立聚类新方法iterative-PopPUNK。

　　理论用于流行病学实践，揭示疾病暴发流行规律，拓展病原识别和溯源方法：建立“数据驱动”疾病暴发识别模型，揭示长期隐匿源头关键作用,指出食源疾病防控新方向；揭示新型致病弧菌等病原的流行病学特征和传播、扩散规律；成功应对、溯源数起突发疫情，发现食源疾病传播新途径。

　　先后主持国家自然科学基金面上、青年项目和中国博士后基金面上、特别资助等项目，作为课题骨干参与多项国家重点研发计划项目。近5年以（共同）第一/通讯作者在Nature Microbiology、The ISME Journal、Emerging Infectious Diseases等国际知名期刊发表SCI论文10余篇。

　　依托病原菌定量基因组学研究组开展科研工作。围绕微生物进化和溯源理论和实际问题，结合群体遗传学和基因组流行病学交叉学科知识，应用新一代测序和基因组学等多组学技术，揭示重要感染性病原微生物的进化、暴发流行规律和致病机制，解决病原发现和溯源等实际流行病学问题，为感染性疾病防控提供科学依据和技术支撑。